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457 lines
15 KiB
457 lines
15 KiB
"""
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Test the hashing module.
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"""
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# Author: Gael Varoquaux <gael dot varoquaux at normalesup dot org>
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# Copyright (c) 2009 Gael Varoquaux
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# License: BSD Style, 3 clauses.
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import time
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import hashlib
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import sys
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import gc
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import io
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import collections
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import itertools
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import pickle
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import random
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from decimal import Decimal
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from joblib.hashing import hash
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from joblib.func_inspect import filter_args
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from joblib.memory import Memory
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from joblib.testing import raises, skipif, fixture, parametrize
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from joblib.test.common import np, with_numpy
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from joblib.my_exceptions import TransportableException
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from joblib._compat import PY3_OR_LATER
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try:
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# Python 2/Python 3 compat
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unicode('str')
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except NameError:
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unicode = lambda s: s
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###############################################################################
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# Helper functions for the tests
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def time_func(func, *args):
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""" Time function func on *args.
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"""
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times = list()
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for _ in range(3):
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t1 = time.time()
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func(*args)
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times.append(time.time() - t1)
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return min(times)
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def relative_time(func1, func2, *args):
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""" Return the relative time between func1 and func2 applied on
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*args.
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"""
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time_func1 = time_func(func1, *args)
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time_func2 = time_func(func2, *args)
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relative_diff = 0.5 * (abs(time_func1 - time_func2)
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/ (time_func1 + time_func2))
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return relative_diff
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class Klass(object):
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def f(self, x):
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return x
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class KlassWithCachedMethod(object):
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def __init__(self, cachedir):
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mem = Memory(cachedir=cachedir)
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self.f = mem.cache(self.f)
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def f(self, x):
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return x
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###############################################################################
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# Tests
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input_list = [1, 2, 1., 2., 1 + 1j, 2. + 1j,
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'a', 'b',
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(1,), (1, 1,), [1, ], [1, 1, ],
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{1: 1}, {1: 2}, {2: 1},
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None,
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gc.collect,
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[1, ].append,
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# Next 2 sets have unorderable elements in python 3.
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set(('a', 1)),
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set(('a', 1, ('a', 1))),
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# Next 2 dicts have unorderable type of keys in python 3.
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{'a': 1, 1: 2},
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{'a': 1, 1: 2, 'd': {'a': 1}}]
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@parametrize('obj1', input_list)
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@parametrize('obj2', input_list)
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def test_trivial_hash(obj1, obj2):
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"""Smoke test hash on various types."""
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# Check that 2 objects have the same hash only if they are the same.
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are_hashes_equal = hash(obj1) == hash(obj2)
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are_objs_identical = obj1 is obj2
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assert are_hashes_equal == are_objs_identical
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def test_hash_methods():
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# Check that hashing instance methods works
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a = io.StringIO(unicode('a'))
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assert hash(a.flush) == hash(a.flush)
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a1 = collections.deque(range(10))
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a2 = collections.deque(range(9))
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assert hash(a1.extend) != hash(a2.extend)
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@fixture(scope='function')
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@with_numpy
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def three_np_arrays():
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rnd = np.random.RandomState(0)
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arr1 = rnd.random_sample((10, 10))
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arr2 = arr1.copy()
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arr3 = arr2.copy()
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arr3[0] += 1
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return arr1, arr2, arr3
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def test_hash_numpy_arrays(three_np_arrays):
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arr1, arr2, arr3 = three_np_arrays
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for obj1, obj2 in itertools.product(three_np_arrays, repeat=2):
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are_hashes_equal = hash(obj1) == hash(obj2)
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are_arrays_equal = np.all(obj1 == obj2)
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assert are_hashes_equal == are_arrays_equal
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assert hash(arr1) != hash(arr1.T)
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def test_hash_numpy_dict_of_arrays(three_np_arrays):
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arr1, arr2, arr3 = three_np_arrays
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d1 = {1: arr1, 2: arr2}
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d2 = {1: arr2, 2: arr1}
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d3 = {1: arr2, 2: arr3}
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assert hash(d1) == hash(d2)
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assert hash(d1) != hash(d3)
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@with_numpy
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@parametrize('dtype', ['datetime64[s]', 'timedelta64[D]'])
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def test_numpy_datetime_array(dtype):
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# memoryview is not supported for some dtypes e.g. datetime64
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# see https://github.com/joblib/joblib/issues/188 for more details
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a_hash = hash(np.arange(10))
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array = np.arange(0, 10, dtype=dtype)
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assert hash(array) != a_hash
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@with_numpy
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def test_hash_numpy_noncontiguous():
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a = np.asarray(np.arange(6000).reshape((1000, 2, 3)),
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order='F')[:, :1, :]
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b = np.ascontiguousarray(a)
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assert hash(a) != hash(b)
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c = np.asfortranarray(a)
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assert hash(a) != hash(c)
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@with_numpy
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@parametrize('coerce_mmap', [True, False])
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def test_hash_memmap(tmpdir, coerce_mmap):
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"""Check that memmap and arrays hash identically if coerce_mmap is True."""
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filename = tmpdir.join('memmap_temp').strpath
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try:
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m = np.memmap(filename, shape=(10, 10), mode='w+')
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a = np.asarray(m)
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are_hashes_equal = (hash(a, coerce_mmap=coerce_mmap) ==
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hash(m, coerce_mmap=coerce_mmap))
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assert are_hashes_equal == coerce_mmap
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finally:
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if 'm' in locals():
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del m
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# Force a garbage-collection cycle, to be certain that the
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# object is delete, and we don't run in a problem under
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# Windows with a file handle still open.
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gc.collect()
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@with_numpy
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@skipif(sys.platform == 'win32', reason='This test is not stable under windows'
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' for some reason')
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def test_hash_numpy_performance():
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""" Check the performance of hashing numpy arrays:
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In [22]: a = np.random.random(1000000)
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In [23]: %timeit hashlib.md5(a).hexdigest()
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100 loops, best of 3: 20.7 ms per loop
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In [24]: %timeit hashlib.md5(pickle.dumps(a, protocol=2)).hexdigest()
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1 loops, best of 3: 73.1 ms per loop
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In [25]: %timeit hashlib.md5(cPickle.dumps(a, protocol=2)).hexdigest()
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10 loops, best of 3: 53.9 ms per loop
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In [26]: %timeit hash(a)
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100 loops, best of 3: 20.8 ms per loop
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"""
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rnd = np.random.RandomState(0)
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a = rnd.random_sample(1000000)
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if hasattr(np, 'getbuffer'):
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# Under python 3, there is no getbuffer
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getbuffer = np.getbuffer
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else:
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getbuffer = memoryview
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md5_hash = lambda x: hashlib.md5(getbuffer(x)).hexdigest()
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relative_diff = relative_time(md5_hash, hash, a)
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assert relative_diff < 0.3
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# Check that hashing an tuple of 3 arrays takes approximately
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# 3 times as much as hashing one array
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time_hashlib = 3 * time_func(md5_hash, a)
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time_hash = time_func(hash, (a, a, a))
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relative_diff = 0.5 * (abs(time_hash - time_hashlib)
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/ (time_hash + time_hashlib))
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assert relative_diff < 0.3
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def test_bound_methods_hash():
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""" Make sure that calling the same method on two different instances
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of the same class does resolve to the same hashes.
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"""
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a = Klass()
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b = Klass()
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assert (hash(filter_args(a.f, [], (1, ))) ==
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hash(filter_args(b.f, [], (1, ))))
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def test_bound_cached_methods_hash(tmpdir):
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""" Make sure that calling the same _cached_ method on two different
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instances of the same class does resolve to the same hashes.
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"""
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a = KlassWithCachedMethod(tmpdir.strpath)
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b = KlassWithCachedMethod(tmpdir.strpath)
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assert (hash(filter_args(a.f.func, [], (1, ))) ==
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hash(filter_args(b.f.func, [], (1, ))))
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@with_numpy
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def test_hash_object_dtype():
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""" Make sure that ndarrays with dtype `object' hash correctly."""
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a = np.array([np.arange(i) for i in range(6)], dtype=object)
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b = np.array([np.arange(i) for i in range(6)], dtype=object)
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assert hash(a) == hash(b)
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@with_numpy
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def test_numpy_scalar():
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# Numpy scalars are built from compiled functions, and lead to
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# strange pickling paths explored, that can give hash collisions
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a = np.float64(2.0)
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b = np.float64(3.0)
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assert hash(a) != hash(b)
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def test_dict_hash(tmpdir):
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# Check that dictionaries hash consistently, eventhough the ordering
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# of the keys is not garanteed
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k = KlassWithCachedMethod(tmpdir.strpath)
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d = {'#s12069__c_maps.nii.gz': [33],
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'#s12158__c_maps.nii.gz': [33],
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'#s12258__c_maps.nii.gz': [33],
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'#s12277__c_maps.nii.gz': [33],
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'#s12300__c_maps.nii.gz': [33],
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'#s12401__c_maps.nii.gz': [33],
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'#s12430__c_maps.nii.gz': [33],
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'#s13817__c_maps.nii.gz': [33],
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'#s13903__c_maps.nii.gz': [33],
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'#s13916__c_maps.nii.gz': [33],
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'#s13981__c_maps.nii.gz': [33],
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'#s13982__c_maps.nii.gz': [33],
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'#s13983__c_maps.nii.gz': [33]}
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a = k.f(d)
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b = k.f(a)
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assert hash(a) == hash(b)
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def test_set_hash(tmpdir):
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# Check that sets hash consistently, even though their ordering
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# is not guaranteed
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k = KlassWithCachedMethod(tmpdir.strpath)
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s = set(['#s12069__c_maps.nii.gz',
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'#s12158__c_maps.nii.gz',
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'#s12258__c_maps.nii.gz',
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'#s12277__c_maps.nii.gz',
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'#s12300__c_maps.nii.gz',
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'#s12401__c_maps.nii.gz',
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'#s12430__c_maps.nii.gz',
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'#s13817__c_maps.nii.gz',
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'#s13903__c_maps.nii.gz',
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'#s13916__c_maps.nii.gz',
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'#s13981__c_maps.nii.gz',
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'#s13982__c_maps.nii.gz',
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'#s13983__c_maps.nii.gz'])
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a = k.f(s)
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b = k.f(a)
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assert hash(a) == hash(b)
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def test_set_decimal_hash():
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# Check that sets containing decimals hash consistently, even though
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# ordering is not guaranteed
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assert (hash(set([Decimal(0), Decimal('NaN')])) ==
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hash(set([Decimal('NaN'), Decimal(0)])))
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def test_string():
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# Test that we obtain the same hash for object owning several strings,
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# whatever the past of these strings (which are immutable in Python)
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string = 'foo'
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a = {string: 'bar'}
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b = {string: 'bar'}
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c = pickle.loads(pickle.dumps(b))
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assert hash([a, b]) == hash([a, c])
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@with_numpy
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def test_dtype():
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# Test that we obtain the same hash for object owning several dtype,
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# whatever the past of these dtypes. Catter for cache invalidation with
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# complex dtype
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a = np.dtype([('f1', np.uint), ('f2', np.int32)])
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b = a
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c = pickle.loads(pickle.dumps(a))
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assert hash([a, c]) == hash([a, b])
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@parametrize('to_hash,expected',
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[('This is a string to hash',
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{'py2': '80436ada343b0d79a99bfd8883a96e45',
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'py3': '71b3f47df22cb19431d85d92d0b230b2'}),
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(u"C'est l\xe9t\xe9",
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{'py2': '2ff3a25200eb6219f468de2640913c2d',
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'py3': '2d8d189e9b2b0b2e384d93c868c0e576'}),
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((123456, 54321, -98765),
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{'py2': '50d81c80af05061ac4dcdc2d5edee6d6',
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'py3': 'e205227dd82250871fa25aa0ec690aa3'}),
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([random.Random(42).random() for _ in range(5)],
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{'py2': '1a36a691b2e2ba3a9df72de3dccf17ea',
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'py3': 'a11ffad81f9682a7d901e6edc3d16c84'}),
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([3, 'abc', None, TransportableException('foo', ValueError)],
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{'py2': 'adb6ba84990ee5e462dc138383f11802',
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'py3': '994f663c64ba5e64b2a85ebe75287829'}),
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({'abcde': 123, 'sadfas': [-9999, 2, 3]},
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{'py2': 'fc9314a39ff75b829498380850447047',
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'py3': 'aeda150553d4bb5c69f0e69d51b0e2ef'})])
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def test_hashes_stay_the_same(to_hash, expected):
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# We want to make sure that hashes don't change with joblib
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# version. For end users, that would mean that they have to
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# regenerate their cache from scratch, which potentially means
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# lengthy recomputations.
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# Expected results have been generated with joblib 0.9.2
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py_version_str = 'py3' if PY3_OR_LATER else 'py2'
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assert hash(to_hash) == expected[py_version_str]
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@with_numpy
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def test_hashes_are_different_between_c_and_fortran_contiguous_arrays():
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# We want to be sure that the c-contiguous and f-contiguous versions of the
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# same array produce 2 different hashes.
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rng = np.random.RandomState(0)
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arr_c = rng.random_sample((10, 10))
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arr_f = np.asfortranarray(arr_c)
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assert hash(arr_c) != hash(arr_f)
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@with_numpy
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def test_0d_array():
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hash(np.array(0))
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@with_numpy
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def test_0d_and_1d_array_hashing_is_different():
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assert hash(np.array(0)) != hash(np.array([0]))
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@with_numpy
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def test_hashes_stay_the_same_with_numpy_objects():
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# We want to make sure that hashes don't change with joblib
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# version. For end users, that would mean that they have to
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# regenerate their cache from scratch, which potentially means
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# lengthy recomputations.
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rng = np.random.RandomState(42)
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# Being explicit about dtypes in order to avoid
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# architecture-related differences. Also using 'f4' rather than
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# 'f8' for float arrays because 'f8' arrays generated by
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# rng.random.randn don't seem to be bit-identical on 32bit and
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# 64bit machines.
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to_hash_list = [
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rng.randint(-1000, high=1000, size=50).astype('<i8'),
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tuple(rng.randn(3).astype('<f4') for _ in range(5)),
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[rng.randn(3).astype('<f4') for _ in range(5)],
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{
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-3333: rng.randn(3, 5).astype('<f4'),
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0: [
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rng.randint(10, size=20).astype('<i8'),
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rng.randn(10).astype('<f4')
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]
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},
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# Non regression cases for https://github.com/joblib/joblib/issues/308.
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# Generated with joblib 0.9.4.
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np.arange(100, dtype='<i8').reshape((10, 10)),
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# Fortran contiguous array
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np.asfortranarray(np.arange(100, dtype='<i8').reshape((10, 10))),
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# Non contiguous array
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np.arange(100, dtype='<i8').reshape((10, 10))[:, :2],
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]
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# These expected results have been generated with joblib 0.9.0
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expected_dict = {'py2': ['80f2387e7752abbda2658aafed49e086',
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'0d700f7f25ea670fd305e4cd93b0e8cd',
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'83a2bdf843e79e4b3e26521db73088b9',
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'63e0efd43c0a9ad92a07e8ce04338dd3',
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'03fef702946b602c852b8b4e60929914',
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'07074691e90d7098a85956367045c81e',
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'd264cf79f353aa7bbfa8349e3df72d8f'],
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'py3': ['10a6afc379ca2708acfbaef0ab676eab',
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'988a7114f337f381393025911ebc823b',
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'c6809f4b97e35f2fa0ee8d653cbd025c',
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'b3ad17348e32728a7eb9cda1e7ede438',
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'927b3e6b0b6a037e8e035bda134e0b05',
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'108f6ee98e7db19ea2006ffd208f4bf1',
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'bd48ccaaff28e16e6badee81041b7180']}
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py_version_str = 'py3' if PY3_OR_LATER else 'py2'
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expected_list = expected_dict[py_version_str]
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for to_hash, expected in zip(to_hash_list, expected_list):
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assert hash(to_hash) == expected
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def test_hashing_pickling_error():
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def non_picklable():
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return 42
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with raises(pickle.PicklingError) as excinfo:
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hash(non_picklable)
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excinfo.match('PicklingError while hashing')
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